Fileupload Control - Set upload path

I'm aware that it won't let you see the full upload path, but that's not what i'm trying to do.
I have a site that uploads multiple PDF files from a CD from one specific computer and that computer is the server that will store the PDF files. I want to do this without having doezens of fileupload controls as the number of PDF files vary from CD to CD.
My problem is that I want the whole process automated. The site will read the names of the PDF files on the CD to the SQL server, which will match, parse, and delete unneeded information with the actual names in a comma delimited textfile. I have that all completed, but i'm only getting the filenames of the PDF and no the contents of the PDF's themselves (They all show 0KB).
I am certain that the problem is that i'm pulling from Directory.GetFiles and it's only saving the filenames instead of the files themselves.
Is th ...