Issue targeting site to .net 4.6

I am having an issue connecting with azure under tls 1.1/1.2. I've been informed that I need to install .net 4.6 on the server. I installed .net 4.6 on Server 2008 SP2. Still getting the issue. I installed .net 4.6 framework and the target pack for VS 2012, changed the project from 4.5 to 4.6, uploaded to server, and still having issue.
This has been passed on to a tech. The tech analyzed the traffic with fiddler and says that .net 4.6 needs to be installed. I test the connection and threw yellow error screen. Now, at the bottom it had this:
Microsoft .NET Framework Version:4.0.30319; ASP.NET Version:4.6.81.0 Doesn't that mean that the server has the .net 4.6. Why is the .net framework version and asp.net version different? How can I make it match?